Shen-Orr, Shai S: search on Z-Library

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1

Network motifs in the transcriptional regulation network of Escherichia coli

Shen-Orr, Shai S., Milo, Ron, Mangan, Shmoolik, Alon, Uri

Journal:

Nature Genetics

Year:

2002

Language:

english

File:

PDF, 1.59 MB

english, 2002

2

Activation of the reward system boosts innate and adaptive immunity

Ben-Shaanan, Tamar L, Azulay-Debby, Hilla, Dubovik, Tania, Starosvetsky, Elina, Korin, Ben, Schiller, Maya, Green, Nathaniel L, Admon, Yasmin, Hakim, Fahed, Shen-Orr, Shai S, Rolls, Asya

Journal:

Nature Medicine

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

3

Defective Signaling in the JAK-STAT Pathway Tracks with Chronic Inflammation and Cardiovascular Risk in Aging Humans

Shen-Orr, Shai S., Furman, David, Kidd, Brian A., Hadad, Francois, Lovelace, Patricia, Huang, Ying-Wen, Rosenberg-Hasson, Yael, Mackey, Sally, Grisar, Fatemeh A. Gomari, Pickman, Yishai, Maecker, Hold

Journal:

Year:

2016

Language:

english

File:

PDF, 3.08 MB

english, 2016

4

Social network architecture of human immune cells unveiled by quantitative proteomics

Rieckmann, Jan C, Geiger, Roger, Hornburg, Daniel, Wolf, Tobias, Kveler, Ksenya, Jarrossay, David, Sallusto, Federica, Shen-Orr, Shai S, Lanzavecchia, Antonio, Mann, Matthias, Meissner, Felix

Journal:

Nature Immunology

Year:

2017

Language:

english

File:

PDF, 2.97 MB

english, 2017

5

Variation in the Human Immune System Is Largely Driven by Non-Heritable Influences

Brodin, Petter, Jojic, Vladimir, Gao, Tianxiang, Bhattacharya, Sanchita, Angel, Cesar J. Lopez, Furman, David, Shen-Orr, Shai, Dekker, Cornelia L., Swan, Gary E., Butte, Atul J., Maecker, Holden T., D

Journal:

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

6

Found In Translation: a machine learning model for mouse-to-human inference

Normand, Rachelly, Du, Wenfei, Briller, Mayan, Gaujoux, Renaud, Starosvetsky, Elina, Ziv-Kenet, Amit, Shalev-Malul, Gali, Tibshirani, Robert J., Shen-Orr, Shai S.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.53 MB

english, 2018

7

F.40. Quantitative Assessment of the Goodness-of-fit of Mouse Models to Human Diseases

Shai Shen-Orr, Atul Butte, Mark Davis

Journal:

Clinical Immunology

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

8

Increased 6-sulfatoxymelatonin excretion in women with polycystic ovary syndrome

Rafael Luboshitzky, Ghali Qupti, Avraham Ishay, Zilla Shen-Orr, Boris Futerman, Shai Linn

Journal:

Fertility and Sterility

Year:

2001

Language:

english

File:

PDF, 159 KB

english, 2001

9

Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset

Somekh, Judith, Shen-Orr, Shai S, Kohane, Isaac S

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.13 MB

english, 2019

10

A Systemic Age Dependent Defect in Immune-cell Signaling Response is Associated with Longevity Biomarkers

Shai Shen-Orr, David Furman, Brian Kidd, Holden Maecker, Cornelia Dekker, Atul Butte, Mark Davis

Journal:

Clinical Immunology

Year:

2010

Language:

english

File:

PDF, 43 KB

english, 2010

11

Simulation of single-protein nanopore sensing shows feasibility for whole-proteome identification

Ohayon, Shilo, Girsault, Arik, Nasser, Maisa, Shen-Orr, Shai, Meller, Amit, Aksimentiev, Aleksei

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 8.43 MB

english, 2019

12

Infliximab–Tumor Necrosis Factor Complexes Elicit Formation of Anti-Drug Antibodies

Bar-Yoseph, Haggai, Pressman, Sigal, Blatt, Alexandra, Gerassy Vainberg, Shiran, Maimon, Naama, Starosvetsky, Elina, Ungar, Bella, Ben-Horin, Shomron, Shen-Orr, Shai S., Chowers, Yehuda

Journal:

Gastroenterology

Year:

2019

Language:

english

File:

PDF, 3.82 MB

english, 2019

13

Cell type–specific gene expression differences in complex tissues

Shen-Orr, Shai S, Tibshirani, Robert, Khatri, Purvesh, Bodian, Dale L, Staedtler, Frank, Perry, Nicholas M, Hastie, Trevor, Sarwal, Minnie M, Davis, Mark M, Butte, Atul J

Journal:

Year:

2010

Language:

english

File:

PDF, 659 KB

english, 2010

14

ImmPort, toward repurposing of open access immunological assay data for translational and clinical research

Bhattacharya, Sanchita, Dunn, Patrick, Thomas, Cristel G., Smith, Barry, Schaefer, Henry, Chen, Jieming, Hu, Zicheng, Zalocusky, Kelly A., Shankar, Ravi D., Shen-Orr, Shai S., Thomson, Elizabeth, Wise

Journal:

Scientific Data

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

15

Alignment of single-cell trajectories to compare cellular expression dynamics

Alpert, Ayelet, Moore, Lindsay S, Dubovik, Tania, Shen-Orr, Shai S

Journal:

Year:

2018

Language:

english

File:

PDF, 1.75 MB

english, 2018

16

A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure

Baron, Maayan, Veres, Adrian, Wolock, Samuel L., Faust, Aubrey L., Gaujoux, Renaud, Vetere, Amedeo, Ryu, Jennifer Hyoje, Wagner, Bridget K., Shen-Orr, Shai S., Klein, Allon M., Melton, Douglas A., Yan

Journal:

Year:

2016

Language:

english

File:

PDF, 15.84 MB

english, 2016

17

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (5 – 9 January 2009)] Biocomputing 2009 - TOWARDS A CYTOKlNE-CELL INTERACTION KNOWLEDGEBASE OF THE ADAPTIVE IMMUNE SYSTEM

SHEN-ORR, SHAI S., GOLDBERGER, OFIR, GARTEN, YAEL, ROSENBERG-HASSON, YAEL, LOVELACE, PATRICIA A., HIRSCHBERG, DAVID L., ALTMAN, RUSS B., DAVIS, MARK M., BUTTE, ATUL J.

Language:

english

File:

PDF, 2.14 MB

english

18

IL-31 induces antitumor immunity in breast carcinoma

Kan, Tal, Feldman, Erik, Timaner, Michael, Raviv, Ziv, Shen-Orr, Shai, Aronheim, Ami, Shaked, Yuval

Journal:

Journal for ImmunoTherapy of Cancer

Year:

2020

File:

PDF, 1.91 MB

2020

19

Variability in the immune system: of vaccine responses and immune states

Shen-Orr, Shai S, Furman, David

Journal:

Current Opinion in Immunology

Year:

2013

Language:

english

File:

PDF, 338 KB

english, 2013

20

Challenges and Promise for the Development of Human Immune Monitoring

Shen-Orr, Shai S.

Journal:

Rambam Maimonides Medical Journal

Year:

2012

Language:

english

File:

PDF, 657 KB

english, 2012

21

The CTLA-4 rs231775 GG genotype is associated with favorable 90-day survival in Caucasian patients with sepsis

Mewes, Caspar, Büttner, Benedikt, Hinz, José, Alpert, Ayelet, Popov, Aron Frederik, Ghadimi, Michael, Beissbarth, Tim, Tzvetkov, Mladen, Shen-Orr, Shai, Bergmann, Ingo, Mansur, Ashham

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 931 KB

english, 2018

22

Dual Oxidase (DUOX) 2 is Increased in Intestinal Inflammation and Mediates Changes in Mucus Composition in Patients with Inflammatory Bowel Diseases (IBD)

Rabinowitz, Keren M., Cohen-Kedar, Sarit, Chait, Karen, Contijoch, Eduardo J., Pasmanik-Chor, Metsada, Faith, Jeremiah, Shen-Orr, Shai, Dotan, Iris

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 673 KB

english, 2017

23

Analyzing Immune Responses to the Seasonal Influenza Vaccine to Understand Immunosenescence

David Furman, Shai Shen-Orr, Cornelia Dekker, Holden Maecker, Mark Davis

Journal:

Clinical Immunology

Year:

2010

Language:

english

File:

PDF, 155 KB

english, 2010

24

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Immunological response in normal healthy twins across age

Bhattacharya, Sanchita, Shen-Orr, Shai, Maecker, Holden, Lazzeroni, Laura, Swan, Gary E., Clark, J. David, Angst, Martin S., Butte, Atul J., Davis, Mark M.

Year:

2010

Language:

english

File:

PDF, 669 KB

english, 2010

25

Pairing of competitive and topologically distinct regulatory modules enhances patterned gene expression

Yanai, Itai, Baugh, L Ryan, Smith, Jessica J, Roehrig, Casey, Shen-Orr, Shai S, Claggett, Julia M, Hill, Andrew A, Slonim, Donna K, Hunter, Craig P

Journal:

Molecular Systems Biology

Year:

2008

Language:

english

File:

PDF, 310 KB

english, 2008

26

Response to: âTofacitinib for the treatment of polyarteritis nodosa: a literature reviewâ by Akiyama et al

Rimar, Doron, Awisat, Abid, Kaly, Lisa, Slobodin, Gleb, Rosner, Itzhak, Rozenbaum, Michael, Ginsberg, Shira, Starosvetsky, Elina, Alpert, Ayelet, Shen-Orr, Shai

Journal:

Annals of the Rheumatic Diseases

Year:

2020

File:

PDF, 160 KB

2020

27

Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution

Carr, Rogan, Shen-Orr, Shai S., Borenstein, Elhanan, Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 664 KB

english, 2013

28

New tools for classification and monitoring of autoimmune diseases

Maecker, Holden T., Lindstrom, Tamsin M., Robinson, William H., Utz, Paul J., Hale, Matthew, Boyd, Scott D., Shen-Orr, Shai S., Fathman, C. Garrison

Journal:

Nature Reviews Rheumatology (formerly Nature Clinical Practice Rheumatology)

Year:

2012

Language:

english

File:

PDF, 767 KB

english, 2012

29

Systems Immunology Reveals Markers of Susceptibility to West Nile Virus Infection

Qian, Feng, Goel, Gautam, Meng, Hailong, Wang, Xiaomei, You, Fuping, Devine, Lesley, Raddassi, Khadir, Garcia, Melissa N., Murray, Kristy O., Bolen, Christopher R., Gaujoux, Renaud, Shen-Orr, Shai S.,

Journal:

Clinical and Vaccine Immunology

Year:

2015

Language:

english

File:

PDF, 1.48 MB

english, 2015

30

Glycolysis-Mediated Changes in Acetyl-CoA and Histone Acetylation Control the Early Differentiation of Embryonic Stem Cells

Moussaieff, Arieh, Rouleau, Matthieu, Kitsberg, Daniel, Cohen, Merav, Levy, Gahl, Barasch, Dinorah, Nemirovski, Alina, Shen-Orr, Shai, Laevsky, Ilana, Amit, Michal, Bomze, David, Elena-Herrmann, Bénéd

Journal:

Cell Metabolism

Year:

2015

Language:

english

File:

PDF, 4.33 MB

english, 2015

31

A c-Myc/miR17-92/Pten Axis Controls PI3K-Mediated Positive and Negative Selection in B Cell Development and Reconstitutes CD19 Deficiency

Benhamou, David, Labi, Verena, Novak, Rostislav, Dai, Isabelle, Shafir-Alon, Shani, Weiss, Ariel, Gaujoux, Renaud, Arnold, Rüdiger, Shen-Orr, Shai S., Rajewsky, Klaus, Melamed, Doron

Journal:

Year:

2016

Language:

english

File:

PDF, 3.02 MB

english, 2016

32

Tofacitinib for polyarteritis nodosa: a tailored therapy

Rimar, Doron, Alpert, Ayelet, Starosvetsky, Elina, Rosner, Itzhak, Slobodin, Gleb, Rozenbaum, Michael, Kaly, Lisa, Boulman, Nina, Awisat, Abid, Ginsberg, Shira, Zilber, Karina, Shen-Orr, Shai S

Journal:

Annals of the Rheumatic Diseases

Year:

2016

Language:

english

File:

PDF, 622 KB

english, 2016

33

Composition and regulation of maternal and zygotic transcriptomes reflects species-specific reproductive mode

Shai S Shen-Orr, Yitzhak Pilpel, Craig P Hunter

Journal:

Year:

2010

Language:

english

File:

PDF, 836 KB

english, 2010

34

Computational deconvolution: extracting cell type-specific information from heterogeneous samples

Shen-Orr, Shai S, Gaujoux, Renaud

Journal:

Current Opinion in Immunology

Year:

2013

Language:

english

File:

PDF, 1.77 MB

english, 2013

35

Sensitivity analysis for inference with partially identifiable covariance matrices

G’Sell, Max Grazier, Shen-Orr, Shai S., Tibshirani, Robert

Journal:

Computational Statistics

Year:

2014

Language:

english

File:

PDF, 533 KB

english, 2014

36

Caution, regulatory network assembly in progress

Casey J. Roehrig, L. Ryan Baugh, Julia M. Claggett, Shai Shen-Orr, Jessica J. Smith, Itai Yanai, P. Hunter

Journal:

Developmental Biology

Year:

2006

Language:

english

File:

PDF, 55 KB

english, 2006

37

Extracting Cell-type-specific Gene Expression Differences from Complex Tissues

Shai Shen-Orr, Alexander Gaidarski, Robert Tibshirani, Purvesh Khatri, Mark Davis, Atul Butte

Journal:

Clinical Immunology

Year:

2010

Language:

english

File:

PDF, 39 KB

english, 2010

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